๐ Emergence of a Novel Coronavirus (COVID-19): Protocol for Extending Surveillance Used by the Royal College of General Practitioners Research and Surveillance Centre and Public Health England.
BACKGROUND: The Royal College of General Practitioners (RCGP) Research and Surveillance Centre (RSC) and Public Health England (PHE) have successfully worked together on the surveillance of influenza and other infectious diseases for over 50 years, including three previous pandemics. With the emergence of the international outbreak of the coronavirus infection (COVID-19), a UK national approach to containment has been established to test people suspected of exposure to COVID-19. At the same time and separately, the RCGP RSC's surveillance has been extended to monitor the temporal and geographical distribution of COVID-19 infection in the community as well as assess the effectiveness of the containment strategy. OBJECTIVES: The aims of this study are to surveil COVID-19 in both asymptomatic populations and ambulatory cases with respiratory infections, ascertain both the rate and pattern of COVID-19 spread, and assess the effectiveness of the containment policy. METHODS: The RCGP RSC, a network of over 500 general practices in England, extract pseudonymized data weekly. This extended surveillance comprises of five components: (1) Recording in medical records of anyone suspected to have or who has been exposed to COVID-19. Computerized medical records suppliers have within a week of request created new codes to support this. (2) Extension of current virological surveillance and testing people with influenza-like illness or lower respiratory tract infections (LRTI)-with the caveat that people suspected to have or who have been exposed to COVID-19 should be referred to the national containment pathway and not seen in primary care. (3) Serology sample collection across all age groups. This will be an extra blood sample taken from people who are attending their general practice for a scheduled blood test. The 100 general practices currently undertaking annual influenza virology surveillance will be involved in the extended virological and serological surveillance. (4) Collecting convalescent serum samples. (5) Data curation. We have the opportunity to escalate the data extraction to twice weekly if needed. Swabs and sera will be analyzed in PHE reference laboratories. RESULTS: General practice clinical system providers have introduced an emergency new set of clinical codes to support COVID-19 surveillance. Additionally, practices participating in current virology surveillance are now taking samples for COVID-19 surveillance from low-risk patients presenting with LRTIs. Within the first 2 weeks of setup of this surveillance, we have identified 3 cases: 1 through the new coding system, the other 2 through the extended virology sampling. CONCLUSIONS: We have rapidly converted the established national RCGP RSC influenza surveillance system into one that can test the effectiveness of the COVID-19 containment policy. The extended surveillance has already seen the use of new codes with 3 cases reported. Rapid sharing of this protocol should enable scientific critique and shared learning. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID): DERR1-10.2196/18606.
keywords
๐ *COVID-19 (1240)
๐ *SARS-CoV-2 (551)
๐ *computerized ()
๐ *coronavirus (5664)
๐ *general practice (3)
๐ *infections (850)
๐ *medical record systems ()
๐ *pandemic (484)
๐ *records as topic ()
๐ *sentinel surveillance ()
๐ *serology (39)
๐ *surveillance (206)
๐ serum samples (106)
๐ infectious disease (312)
๐ coronavirus infection (270)
๐ respiratory tract (344)
๐ tract infections (83)
๐ infectious diseases (94)
author
๐ค de Lusignan, Simon
๐ค Lopez Bernal, Jamie
๐ค Zambon, Maria
๐ค Akinyemi, Oluwafunmi
๐ค Amirthalingam, Gayatri
๐ค Andrews, Nick
๐ค Borrow, Ray
๐ค Byford, Rachel
๐ค Charlett, Andre
๐ค Dabrera, Gavin
๐ค Ellis, Joanna
๐ค Elliot, Alex J
๐ค Feher, Michael
๐ค Ferreira, Filipa
๐ค Krajenbrink, Else
๐ค Leach, Jonathan
๐ค Linley, Ezra
๐ค Liyanage, Harshana
๐ค Okusi, Cecilia
๐ค Ramsay, Mary
๐ค Smith, Gillian
๐ค Sherlock, Julian
๐ค Thomas, Nicholas
๐ค Tripathy, Manasa
๐ค Williams, John
๐ค Howsam, Gary
๐ค Joy, Mark
๐ค Hobbs, Richard
year
โฐ 2020
journal
๐ JMIR Public Health Surveill
issn
๐
volume
number
page
citedbycount
0
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