๐ A kinome-wide small interfering RNA screen identifies proviral and antiviral host factors in severe acute respiratory syndrome coronavirus replication, including double-stranded RNA-activated protein kinase and early secretory pathway proteins
ยฉ 2015, American Society for Microbiology. To identify host factors relevant for severe acute respiratory syndrome-coronavirus (SARS-CoV) replication, we performed a small interfering RNA (siRNA) library screen targeting the human kinome. Protein kinases are key regulators of many cellular functions, and the systematic knockdown of their expression should provide a broad perspective on factors and pathways promoting or antagonizing coronavirus replication. In addition to 40 proteins that promote SARS-CoV replication, our study identified 90 factors exhibiting an antiviral effect. Pathway analysis grouped subsets of these factors in specific cellular processes, including the innate immune response and the metabolism of complex lipids, which appear to play a role in SARS-CoV infection. Several factors were selected for in-depth validation in follow-up experiments. In cells depleted for the ฮฒ2 subunit of the coatomer protein complex (COPB2), the strongest proviral hit, we observed reduced SARS-CoV protein expression and a > 2-log reduction in virus yield. Knockdown of the COPB2-related proteins COPB1 and Golgi-specific brefeldin A-resistant guanine nucleotide exchange factor 1 (GBF1) also suggested that COPI-coated vesicles and/or the early secretory pathway are important for SARS-CoV replication. Depletion of the antiviral double-stranded RNA-activated protein kinase (PKR) enhanced virus replication in the primary screen, and validation experiments confirmed increased SARS-CoV protein expression and virus production upon PKR depletion. In addition, cyclin-dependent kinase 6 (CDK6) was identified as a novel antiviral host factor in SARSCoV replication. The inventory of pro- and antiviral host factors and pathways described here substantiates and expands our understanding of SARS-CoV replication and may contribute to the identification of novel targets for antiviral therapy.
keywords
๐ severe acute (1373)
๐ secretory pathway (16)
๐ innate immune (105)
๐ immune response (314)
๐ virus replication (219)
๐ respiratory syndrome (2004)
๐ acute respiratory (1734)
author
๐ค de Wilde, Adriaan H.
๐ค Wannee, Kazimier F.
๐ค Scholte, Florine E.M.
๐ค Goeman, Jelle J.
๐ค Ten Dijke, Peter
๐ค Snijder, Eric J.
๐ค Kikkert, Marjolein
๐ค van Hemert, Martijn J.
year
โฐ 2015
journal
๐ Journal of Virology
issn
๐ 10985514 0022538X
volume
89
number
16
page
8318-8333
citedbycount
17
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