๐ Crystal structure of nonstructural protein 10 from the severe acute respiratory syndrome coronavirus reveals a novel fold with two zinc-binding motifs
The severe acute respiratory syndrome coronavirus (SARS-CoV) possesses a large 29.7-kb positive-stranded RNA genome. The first open reading frame encodes replicase polyproieins 1a and 1ab, which are cleaved to generate 16 "nonstructural" proteins, nsp1 to nsp16, involved in viral replication and/or RNA processing. Among these, nsp10 plays a critical role in minus-strand RNA synthesis in a related coronavirus, murine hepatitis virus. Here, we report the crystal structure of SARS-CoV nsp10 at a resolution of 1.8 ร
as determined by single-wavelength anomalous dispersion using phases derived from hexatantalum dodecabromide. nsp10 is a single domain protein consisting of a pair of antiparallel N-terminal helices stacked against an irregular ฮฒ-sheet, a coil-rich C terminus, and two Zn fingers. nsp10 represents a novel fold and is the first structural representative of this family of Zn finger proteins found so far exclusively in coronaviruses. The first Zn finger coordinates a Zn2+ ion in a unique conformation. The second Zn finger, with four cysteines, is a distant member of the "gag-knuckle fold group" of Zn2+-binding domains and appears to maintain the structural integrity of the C-terminal tail. A distinct clustering of basic residues on the protein surface suggests a nucleic acid-binding function. Gel shift assays indicate that in isolation, nsp10 binds single- and double-stranded RNA and DNA with high-micromolar affinity and without obvious sequence specificity. It is possible that nsp10 functions within a larger RNA-binding protein complex. However, its exact role within the replicase complex is still not clear. Copyright ยฉ 2006, American Society for Microbiology.
keywords
๐ severe acute (1373)
๐ syndrome coronavirus (1074)
๐ reading frame (222)
๐ hepatitis virus (437)
๐ murine hepatitis (71)
๐ nucleic acid (139)
๐ respiratory syndrome (2004)
๐ acute respiratory (1734)
๐ open reading (215)
๐ crystal structure (114)
๐ viral replication (258)
author
๐ค Joseph, Jeremiah S.
๐ค Saikatendu, Kumar Singh
๐ค Subramanian, Vanitha
๐ค Neuman, Benjamin W.
๐ค Brooun, Alexei
๐ค Griffith, Mark
๐ค Moy, Kin
๐ค Yadav, Maneesh K.
๐ค Velasquez, Jeffrey
๐ค Buchmeier, Michael J.
๐ค Stevens, Raymond C.
๐ค Kuhn, Peter
year
โฐ 2006
journal
๐ Journal of Virology
issn
๐ 0022538X
volume
80
number
16
page
7894-7901
citedbycount
57
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