🔗 Simulation

Articles (42)

• A Case Study Evaluating the Risk of Infection from Middle Eastern Respiratory Syndrome Coronavirus (MERS-CoV) in a Hospital Setting Through Bioaerosols

  👤 Adhikari, Umesh 👤 Chabrelie, Alexandre 👤 Weir, Mark 👤 Boehnke, Kevin 👤 McKenzie, Erica 👤 Ikner, Luisa 👤 Wang, Meng 👤 Wang, Qing 👤 Young, Kyana 👤 Haas, Charles N. 👤 Rose, Joan 👤 Mitchell, Jade ⏰ 2019 📚 Risk Analysis

• A Community Letter Regarding Sharing Bimolecular Simulation Data for COVID-19.

  👤 Amaro, Rommie E 👤 Mulholland, Adrian J ⏰ 2020 📚 J Chem Inf Model

• Data-based analysis, modelling and forecasting of the COVID-19 outbreak.

  👤 Anastassopoulou, Cleo 👤 Russo, Lucia 👤 Tsakris, Athanasios 👤 Siettos, Constantinos ⏰ 2020 📚 PLoS One

• A trimerizing GxxxG Motif is uniquely inserted in the severe acute respiratory syndrome (SARS) coronavirus spike protein transmembrane domain

  👤 Arbely, Eyal 👤 Granot, Zvi 👤 Kass, Itamar 👤 Orly, Joseph 👤 Arkin, Isaiah T. ⏰ 2006 📚 Biochemistry

• Immunoinformatics-aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019-nCoV.

  👤 Baruah, Vargab 👤 Bose, Sujoy ⏰ 2020 📚 J Med Virol

• Crystal structure-based exploration of the important role of Arg106 in the RNA-binding domain of human coronavirus OC43 nucleocapsid protein

  👤 Chen, I. Jung 👤 Yuann, Jeu Ming P. 👤 Chang, Yu Ming 👤 Lin, Shing Yen 👤 Zhao, Jincun 👤 Perlman, Stanley 👤 Shen, Yo Yu 👤 Huang, Tai Huang 👤 Hou, Ming Hon ⏰ 2013 📚 Biochimica et Biophysica Acta - Proteins and Proteomics

• Severe acute respiratory syndrome coronavirus 3C-like proteinase N terminus is indispensable for proteolytic activity but not for enzyme dimerization: Biochemical and thermodynamic investigation in conjunction with molecular dynamics simulations

  👤 Chen, Shuai 👤 Chen, Lili 👤 Tan, Jinzhi 👤 Chen, Jing 👤 Du, Li 👤 Sun, Tao 👤 Shen, Jianhua 👤 Chen, Kaixian 👤 Jiang, Hualiang 👤 Shen, Xu ⏰ 2005 📚 Journal of Biological Chemistry

• Residues on the dimer interface of SARS coronavirus 3C-like protease: Dimer stability characterization and enzyme catalytic activity analysis

  👤 Chen, Shuai 👤 Zhang, Jian 👤 Hu, Tiancen 👤 Chen, Kaixian 👤 Jiang, Hualiang 👤 Shen, Xu ⏰ 2008 📚 Journal of Biochemistry

• Structure analysis of the receptor binding of 2019-nCoV.

  👤 Chen, Yun 👤 Guo, Yao 👤 Pan, Yihang 👤 Zhao, Zhizhuang Joe ⏰ 2020 📚 Biochem Biophys Res Commun

• Palindromes in SARS and other coronaviruses

  👤 Chew, David S.H. 👤 Choi, Kwok Pui 👤 Heidner, Hans 👤 Leung, Ming Ying ⏰ 2004 📚 INFORMS Journal on Computing

• Using Technology to Maintain the Education of Residents During the COVID-19 Pandemic.

  👤 Chick, Robert Connor 👤 Clifton, Guy Travis 👤 Peace, Kaitlin M 👤 Propper, Brandon W 👤 Hale, Diane F 👤 Alseidi, Adnan A 👤 Vreeland, Timothy J ⏰ 2020 📚 J Surg Educ

• Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase

  👤 Du, Qishi 👤 Wang, Shuqing 👤 Wei, Dongqing 👤 Sirois, Suzanne 👤 Chou, Kuo Chen ⏰ 2005 📚 Analytical Biochemistry

• Transmission dynamics of the COVID-19 outbreak and effectiveness of government interventions: A data-driven analysis.

  👤 Fang, Yaqing 👤 Nie, Yiting 👤 Penny, Marshare ⏰ 2020 📚 J Med Virol

• Use of in situ simulation to evaluate the operational readiness of a high-consequence infectious disease intensive care unit.

  👤 Fregene, T E 👤 Nadarajah, P 👤 Buckley, J F 👤 Bigham, S 👤 Nangalia, V ⏰ 2020 📚 Anaesthesia

• Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors

  👤 Hoffmann, Marcin 👤 Eitner, Krystian 👤 Von Grotthuss, Marcin 👤 Rychlewski, Leszek 👤 Banachowicz, Ewa 👤 Grabarkiewicz, Tomasz 👤 Szkoda, Tomasz 👤 Kolinski, Andrzej ⏰ 2006 📚 Journal of Computer-Aided Molecular Design

• A Simulation on Potential Secondary Spread of Novel Coronavirus in an Exported Country Using a Stochastic Epidemic SEIR Model.

  👤 Iwata, Kentaro 👤 Miyakoshi, Chisato ⏰ 2020 📚 J Clin Med

• Identifying inhibitors of the SARS coronavirus proteinase

  👤 Jenwitheesuk, Ekachai 👤 Samudrala, Ram ⏰ 2003 📚 Bioorganic and Medicinal Chemistry Letters

• Molecular dynamics of Middle East Respiratory Syndrome Coronavirus (MERS CoV) fusion heptad repeat trimers

  👤 Kandeel, Mahmoud 👤 Al-Taher, Abdulla 👤 Li, Huifang 👤 Schwingenschlogl, Udo 👤 Al-Nazawi, Mohamed ⏰ 2018 📚 Computational Biology and Chemistry

• Analysis of COVID-19 infection spread in Japan based on stochastic transition model.

  👤 Karako, Kenji 👤 Song, Peipei 👤 Chen, Yu 👤 Tang, Wei ⏰ 2020 📚 Biosci Trends

• Targeting SARS-CoV-2: A Systematic Drug Repurposing Approach to Identify Promising Inhibitors Against 3C-like Proteinase and 2'-O-RiboseMethyltransferase.

  👤 Khan, Rameez Jabeer 👤 Jha, Rajat Kumar 👤 Amera, GizachewMuluneh 👤 Jain, Monika 👤 Singh, Ekampreet 👤 Pathak, Amita 👤 Singh, Rashmi Prabha 👤 Muthukumaran, Jayaraman 👤 Singh, Amit Kumar ⏰ 2020 📚 J Biomol Struct Dyn

• Identification of Chymotrypsin-like Protease Inhibitors of SARS-CoV-2 Via Integrated Computational Approach.

  👤 Khan, Salman Ali 👤 Zia, Komal 👤 Ashraf, Sajda 👤 Uddin, Reaz 👤 Ul-Haq, Zaheer ⏰ 2020 📚 J Biomol Struct Dyn

• School Opening Delay Effect on Transmission Dynamics of Coronavirus Disease 2019 in Korea: Based on Mathematical Modeling and Simulation Study.

  👤 Kim, Soyoung 👤 Kim, Yae Jean 👤 Peck, Kyong Ran 👤 Jung, Eunok ⏰ 2020 📚 J Korean Med Sci

• Design and synthesis of a series of serine derivatives as small molecule inhibitors of the SARS coronavirus 3CL protease

  👤 Konno, Hiroyuki 👤 Wakabayashi, Masaki 👤 Takanuma, Daiki 👤 Saito, Yota 👤 Akaji, Kenichi ⏰ 2016 📚 Bioorganic and Medicinal Chemistry

• Interventions to mitigate early spread of SARS-CoV-2 in Singapore: a modelling study.

  👤 Koo, Joel R 👤 Cook, Alex R 👤 Park, Minah 👤 Sun, Yinxiaohe 👤 Sun, Haoyang 👤 Lim, Jue Tao 👤 Tam, Clarence 👤 Dickens, Borame L ⏰ 2020 📚 Lancet Infect Dis

• Homology models of main proteinase from coronavirus associated with SARS

  👤 Liu, Hsuan Liang 👤 Lin, Jin Chung 👤 Ho, Yih 👤 Chen, Chin Wen ⏰ 2005 📚 Chemical Physics Letters

• Molecular dynamics simulations of various coronavirus main proteinases

  👤 Liu, Hsuan Liang 👤 Lin, Jin Chung 👤 Ho, Yih 👤 Hsieh, Wei Chan 👤 Chen, Chin Wen 👤 Su, Yuan Chen ⏰ 2004 📚 Journal of Biomolecular Structure and Dynamics

• Homology models and molecular dynamics simulations of main proteinase from coronavirus associated with Severe Acute Respiratory Syndrome (SARS)

  👤 Liu, Hsuan Liang 👤 Lin, Jin Chung 👤 Ho, Yih 👤 Hsieh, Wei Chan 👤 Chen, Chin Wen 👤 Su, Yuan Chen ⏰ 2004 📚 Journal of the Chinese Chemical Society

• Resource Allocation and Decision Making for Pediatric and Congenital Cardiac Catheterization During the Novel Coronavirus SARS-CoV-2 (COVID-19) Pandemic: A U.S. Multi-Institutional Perspective.

  👤 Morray, Brian H 👤 Gordon, Brent M 👤 Crystal, Matthew A 👤 Goldstein, Bryan H 👤 Qureshi, Athar M 👤 Torres, Alejandro J 👤 Epstein, Shilpi M 👤 Crittendon, Ivory 👤 Ing, Frank F 👤 Sathanandam, Shyam K ⏰ 2020 📚 J Invasive Cardiol

• Computational studies of drug repurposing and synergism of lopinavir, oseltamivir and ritonavir binding with SARS-CoV-2 Protease against COVID-19.

  👤 Muralidharan, Nisha 👤 Sakthivel, R 👤 Velmurugan, D 👤 Gromiha, M Michael ⏰ 2020 📚 J Biomol Struct Dyn

• Autoprocessing mechanism of severe acute respiratory syndrome coronavirus 3C-like protease (SARS-CoV 3CLpro) from its polyproteins

  👤 Muramatsu, Tomonari 👤 Kim, Yong Tae 👤 Nishii, Wataru 👤 Terada, Takaho 👤 Shirouzu, Mikako 👤 Yokoyama, Shigeyuki ⏰ 2013 📚 FEBS Journal

• The structure of the endoribonuclease XendoU: From small nucleolar RNA processing to severe acute respiratory syndrome coronavirus replication

  👤 Renzi, Fabiana 👤 Caffarelli, Elisa 👤 Laneve, Pietro 👤 Bozzoni, Irene 👤 Brunori, Maurizio 👤 Vallone, Beatrice ⏰ 2006 📚 Proceedings of the National Academy of Sciences of the United States of America

• Effect of delay in diagnosis on transmission of COVID-19.

  👤 Rong, Xin Miao 👤 Yang, Liu 👤 Chu, Hui di 👤 Fan, Meng ⏰ 2020 📚 Math Biosci Eng

• A conserved RNA pseudoknot in a putative molecular switch domain of the 3′-untranslated region of coronaviruses is only marginally stable

  👤 Stammler, Suzanne N. 👤 Cao, Song 👤 Chen, Shi Jie 👤 Giedroc, David P. ⏰ 2011 📚 RNA

• The transmembrane oligomers of coronavirus protein E

  👤 Torres, Jaume 👤 Wang, Jifeng 👤 Parthasarathy, Krupakar 👤 Liu, Ding Xiang ⏰ 2005 📚 Biophysical Journal

• Modeling the transmission dynamics of the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) with latent immigrants

  👤 Usaini, S. 👤 Hassan, A. S. 👤 Garba, S. M. 👤 Lubuma, J. M.S. ⏰ 2019 📚 Journal of Interdisciplinary Mathematics

• Disposable DNA Amplification Chips with Integrated Low-Cost Heaters.

  👤 Veltkamp, Henk-Willem 👤 Akegawa Monteiro, Fernanda 👤 Sanders, Remco 👤 Wiegerink, Remco 👤 Lotters, Joost ⏰ 2020 📚 Micromachines (Basel)

• Locally Informed Simulation to Predict Hospital Capacity Needs During the COVID-19 Pandemic.

  👤 Weissman, Gary E 👤 Crane-Droesch, Andrew 👤 Chivers, Corey 👤 Luong, ThaiBinh 👤 Hanish, Asaf 👤 Levy, Michael Z 👤 Lubken, Jason 👤 Becker, Michael 👤 Draugelis, Michael E 👤 Anesi, George L 👤 Brennan, Patrick J 👤 Christie, Jason D 👤 Hanson Iii, C William 👤 Mikkelsen, Mark E 👤 Halpern, Scott D ⏰ 2020 📚 Ann Intern Med

• Peer-to-Peer Contact Tracing: A Privacy-Preserving Smartphone Application.

  👤 Yasaka, Tyler M 👤 Lehrich, Brandon M 👤 Sahyouni, Ronald ⏰ 2020 📚 JMIR Public Health Surveill

• Ventilation of general hospital wards for mitigating infection risks of three kinds of viruses including Middle East respiratory syndrome coronavirus

  👤 Yu, H. C. 👤 Mui, K. W. 👤 Wong, L. T. 👤 Chu, H. S. ⏰ 2017 📚 Indoor and Built Environment

• Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors

  👤 Zhang, Yuan 👤 Zheng, Nan 👤 Nan, Peng 👤 Cao, Ying 👤 Hasegawa, Masami 👤 Zhong, Yang ⏰ 2007 📚 Computational Biology and Chemistry

• Identification of novel proteolytically inactive mutations in coronavirus 3C-like protease using a combined approach

  👤 Zhou, Junwei 👤 Fang, Liurong 👤 Yang, Zhixiang 👤 Xu, Shangen 👤 Lv, Mengting 👤 Sun, Zheng 👤 Chen, Jiyao 👤 Wang, Dang 👤 Gao, Jun 👤 Xiao, Shaobo ⏰ 2019 📚 FASEB journal : official publication of the Federation of American Societies for Experimental Biology

• New coronavirus outbreak. Lessons learned from the severe acute respiratory syndrome epidemic

  👤 Álvarez, E. 👤 Donado-Campos, J. 👤 Morilla, F. ⏰ 2015 📚 Epidemiology and Infection