🔗 Bioinformatics

Articles (37)

• The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity

  👤 Barretto, Naina 👤 Jukneliene, Dalia 👤 Ratia, Kiira 👤 Chen, Zhongbin 👤 Mesecar, Andrew D. 👤 Baker, Susan C. ⏰ 2005 📚 Journal of Virology

• Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan.

  👤 Chan, Jasper Fuk-Woo 👤 Kok, Kin-Hang 👤 Zhu, Zheng 👤 Chu, Hin 👤 To, Kelvin Kai-Wang 👤 Yuan, Shuofeng 👤 Yuen, Kwok-Yung ⏰ 2020 📚 Emerg Microbes Infect

• Cross-reactive antibodies in convalescent SARS patients' sera against the emerging novel human coronavirus EMC (2012) by both immunofluorescent and neutralizing antibody tests

  👤 Chan, Kwok Hung 👤 Chan, Jasper Fuk Woo 👤 Tse, Herman 👤 Chen, Honglin 👤 Lau, Candy Choi Yi 👤 Cai, Jian Piao 👤 Tsang, Alan Ka Lun 👤 Xiao, Xincai 👤 To, Kelvin Kai Wang 👤 Lau, Susanna Kar Pui 👤 Woo, Patrick Chiu Yat 👤 Zheng, Bo Jiang 👤 Wang, Ming 👤 Yuen, Kwok Yung ⏰ 2013 📚 Journal of Infection

• Modular organization of SARS coronavirus nucleocapsid protein

  👤 Chang, Chung Ke 👤 Sue, Shih Che 👤 Yu, Tsan Hung 👤 Hsieh, Chiu Min 👤 Tsai, Cheng Kun 👤 Chiang, Yen Chieh 👤 Lee, Shin Jye 👤 Hsiao, Hsin Hao 👤 Wu, Wen Jin 👤 Chang, Wei Lun 👤 Lin, Chun Hung 👤 Huang, Tai Huang ⏰ 2006 📚 Journal of Biomedical Science

• Induction of T-cell response by a DNA vaccine encoding a novel HLA-A*0201 severe acute respiratory syndrome coronavirus epitope

  👤 Cheung, Ying Kit 👤 Cheng, Samuel Chak Sum 👤 Sin, Fion Wan Yee 👤 Chan, Kin Tak 👤 Xie, Yong ⏰ 2007 📚 Vaccine

• Synthetic peptide studies on the Severe Acute Respiratory Syndrome (SARS) coronavirus spike glycoprotein: Perspective for SARS vaccine development

  👤 Choy, Wai Yan 👤 Lin, Shu Guang 👤 Chan, Paul Kay Sheung 👤 Tam, John Siu Lun 👤 Lo, Y. M.Dennis 👤 Chu, Ida Miu Ting 👤 Tsai, Sau Na 👤 Zhong, Ming Qi 👤 Fung, Kwok Pui 👤 Waye, Mary Miu Yee 👤 Tsui, Stephen Kwok Wing 👤 Ng, Kai On 👤 Shan, Zhi Xin 👤 Yang, Min 👤 Wu, Yi Long 👤 Lin, Zhan Yi 👤 Ngai, Sai Ming ⏰ 2004 📚 Clinical Chemistry

• Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.

  👤 Cleemput, Sara 👤 Dumon, Wim 👤 Fonseca, Vagner 👤 Karim, Wasim Abdool 👤 Giovanetti, Marta 👤 Alcantara, Luiz Carlos 👤 Deforche, Koen 👤 de Oliveira, Tulio ⏰ 2020 📚 Bioinformatics

• Identification of coronavirus sequences in carp cDNA from Wuhan, China.

  👤 Conway, Michael J ⏰ 2020 📚 J Med Virol

• Coronavirus nonstructural protein 16 is a cap-0 binding enzyme possessing (nucleoside-2′O)-methyltransferase activity

  👤 Decroly, Etienne 👤 Imbert, Isabelle 👤 Coutard, Bruno 👤 Bouvet, Mickaël 👤 Selisko, Barbara 👤 Alvarez, Karine 👤 Gorbalenya, Alexander E. 👤 Snijder, Eric J. 👤 Canard, Bruno ⏰ 2008 📚 Journal of Virology

• SARS-unique fold in the Rousettus bat coronavirus HKU9

  👤 Hammond, Robert G. 👤 Tan, Xuan 👤 Johnson, Margaret A. ⏰ 2017 📚 Protein Science

• Bioinformatics research on the SARS coronavirus (SARS_CoV) in China

  👤 Hao, Pei 👤 Chen, Min 👤 Zhang, Guoqing 👤 He, Weizhong 👤 Li, Yixue ⏰ 2006 📚 Current Pharmaceutical Design

• COVID-19 spike-host cell receptor GRP78 binding site prediction.

  👤 Ibrahim, Ibrahim M 👤 Abdelmalek, Doaa H 👤 Elshahat, Mohammed E 👤 Elfiky, Abdo A ⏰ 2020 📚 J Infect

• A fluorogenic peptide cleavage assay to screen for proteolytic activity: Applications for coronavirus spike protein activation

  👤 Jaimes, Javier A. 👤 Millet, Jean K. 👤 Goldstein, Monty E. 👤 Whittaker, Gary R. 👤 Straus, Marco R. ⏰ 2019 📚 Journal of Visualized Experiments

• Epidemiological, clinical and virological characteristics of 74 cases of coronavirus-infected disease 2019 (COVID-19) with gastrointestinal symptoms.

  👤 Jin, Xi 👤 Lian, Jiang-Shan 👤 Hu, Jian-Hua 👤 Gao, Jianguo 👤 Zheng, Lin 👤 Zhang, Yi-Min 👤 Hao, Shao-Rui 👤 Jia, Hong-Yu 👤 Cai, Huan 👤 Zhang, Xiao-Li 👤 Yu, Guo-Dong 👤 Xu, Kai-Jin 👤 Wang, Xiao-Yan 👤 Gu, Jue-Qing 👤 Zhang, Shan-Yan 👤 Ye, Chan-Yuan 👤 Jin, Ci-Liang 👤 Lu, Ying-Feng 👤 Yu, Xia 👤 Yu, Xiao-Peng 👤 Huang, Jian-Rong 👤 Xu, Kang-Li 👤 Ni, Qin 👤 Yu, Cheng-Bo 👤 Zhu, Biao 👤 Li, Yong-Tao 👤 Liu, Jun 👤 Zhao, Hong 👤 Zhang, Xuan 👤 Yu, Liang 👤 Guo, Yong-Zheng 👤 Su, Jun-Wei 👤 Tao, Jing-Jing 👤 Lang, Guan-Jing 👤 Wu, Xiao-Xin 👤 Wu, Wen-Rui 👤 Qv, Ting-Ting 👤 Xiang, Dai-Rong 👤 Yi, Ping 👤 Shi, Ding 👤 Chen, Yanfei 👤 Ren, Yue 👤 Qiu, Yun-Qing 👤 Li, Lan-Juan 👤 Sheng, Jifang 👤 Yang, Yida ⏰ 2020 📚 Gut

• Antiviral potential of ERK/MAPK and PI3K/AKT/mTOR signaling modulation for Middle East respiratory syndrome coronavirus infection as identified by temporal kinome analysis

  👤 Kindrachuk, Jason 👤 Ork, Britini 👤 Hart, Brit J. 👤 Mazur, Steven 👤 Holbrook, Michael R. 👤 Frieman, Matthew B. 👤 Traynor, Dawn 👤 Johnson, Reed F. 👤 Dyall, Julie 👤 Kuhn, Jens H. 👤 Olinger, Gene G. 👤 Hensley, A. Lisa E. 👤 Jahrlinga, Peter B. ⏰ 2015 📚 Antimicrobial Agents and Chemotherapy

• Extraordinary GU-rich single-strand RNA identified from SARS coronavirus contributes an excessive innate immune response

  👤 Li, Yan 👤 Chen, Ming 👤 Cao, Hongwei 👤 Zhu, Yuanfeng 👤 Zheng, Jiang 👤 Zhou, Hong ⏰ 2013 📚 Microbes and Infection

• Identification of an epitope of SARS-coronavirus nucleocapsid protein.

  👤 Lin, Ying 👤 Shen, X. 👤 Yang, Rui Fu 👤 Li, Yi Xue 👤 Ji, Yong Yong 👤 He, You Yu 👤 Shi, M. D. 👤 Lu, Wei 👤 Shi, Tie Liu 👤 Wang, Jin 👤 Wang, Hong Xia 👤 Jiang, Hua Liang 👤 Shen, Jian Hua 👤 Xie, You Hua 👤 Wang, Yuan 👤 Pei, Gang 👤 Shen, Bei Fen 👤 Wu, Jia Rui 👤 Sun, Bing ⏰ 2003 📚 Cell research

• The papain-like protease from the severe acute respiratory syndrome coronavirus is a deubiquitinating enzyme

  👤 Lindner, Holger A. 👤 Fotouhi-Ardakani, Nasser 👤 Lytvyn, Viktoria 👤 Lachance, Paule 👤 Sulea, Traian 👤 Ménard, Robert ⏰ 2005 📚 Journal of Virology

• Sequence analysis and structural prediction of the severe acute respiratory syndrome coronavirus nsp5

  👤 Lu, Jia Hai 👤 Zhang, Ding Mei 👤 Wang, Guo Ling 👤 Guo, Zhong Min 👤 Li, Juan 👤 Tan, Bing Yan 👤 Ou-Yang, Li Ping 👤 Ling, Wen Hua 👤 Yu, Xin Bing 👤 Zhong, Nan Shan ⏰ 2005 📚 Acta Biochimica et Biophysica Sinica

• Synthetic peptides derived from SARS coronavirus S protein with diagnostic and therapeutic potential

  👤 Lu, Wei 👤 Wu, Xiao Dong 👤 Shi, Mu De 👤 Yang, Rui Fu 👤 He, You Yu 👤 Bian, Chao 👤 Shi, Tie Liu 👤 Yang, Sheng 👤 Zhu, Xue Liang 👤 Jiang, Wei Hong 👤 Li, Yi Xue 👤 Yan, Lin Chen 👤 Ji, Yong Yong 👤 Lin, Ying 👤 Lin, Guo Mei 👤 Tian, Lin 👤 Wang, Jin 👤 Wang, Hong Xia 👤 Xie, You Hua 👤 Pei, Gang 👤 Wu, Jia Rui 👤 Sun, Bing ⏰ 2005 📚 FEBS Letters

• Molecular mapping of the RNA cap 2′-O-methyltransferase activation interface between severe acute respiratory syndrome coronavirus nsp10 and nsp16

  👤 Lugari, Adrien 👤 Betzi, Stephane 👤 Decroly, Etienne 👤 Bonnaud, Emmanuel 👤 Hermant, Aurélie 👤 Guillemot, Jean Claude 👤 Debarnot, Claire 👤 Borg, Jean Paul 👤 Bouvet, Mickaël 👤 Canard, Bruno 👤 Morelli, Xavier 👤 Lécine, Patrick ⏰ 2010 📚 Journal of Biological Chemistry

• Nucleocapsid protein of SARS coronavirus tightly binds to human cyclophilin A

  👤 Luo, Cheng 👤 Luo, Haibin 👤 Zheng, Suxin 👤 Gui, Chunshan 👤 Yue, Liduo 👤 Yu, Changying 👤 Sun, Tao 👤 He, Peilan 👤 Chen, Jing 👤 Shen, Jianhua 👤 Luo, Xiaomin 👤 Li, Yixue 👤 Liu, Hong 👤 Bai, Donglu 👤 Shen, Jingkang 👤 Yang, Yiming 👤 Li, Fangqiu 👤 Zuo, Jianping 👤 Hilgenfeld, Rolf 👤 Pei, Gang 👤 Chen, Kaixian 👤 Shen, Xu 👤 Jiang, Hualiang ⏰ 2004 📚 Biochemical and Biophysical Research Communications

• Host cell entry of Middle East respiratory syndrome coronavirus after two-step, furin-mediated activation of the spike protein

  👤 Mille, Jean Kaoru 👤 Whittaker, Gary R. ⏰ 2014 📚 Proceedings of the National Academy of Sciences of the United States of America

• Atlas of coronavirus replicase structure

  👤 Neuman, Benjamin W. 👤 Chamberlain, Peter 👤 Bowden, Fern 👤 Joseph, Jeremiah ⏰ 2014 📚 Virus Research

• Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3

  👤 Neuman, Benjamin W. 👤 Joseph, Jeremiah S. 👤 Saikatendu, Kumar S. 👤 Serrano, Pedro 👤 Chatterjee, Amarnath 👤 Johnson, Margaret A. 👤 Liao, Lujian 👤 Klaus, Joseph P. 👤 Yates III, John R. 👤 Wüthrich, Kurt 👤 Stevens, Raymond C. 👤 Buchmeier, Michael J. 👤 Kuhn, Peter ⏰ 2008 📚 Journal of Virology

• Virus pathogen Database and Analysis Resource (ViPR): A comprehensive bioinformatics Database and Analysis Resource for the Coronavirus research community

  👤 Pickett, Brett E. 👤 Greer, Douglas S. 👤 Zhang, Yun 👤 Stewart, Lucy 👤 Zhou, Liwei 👤 Sun, Guangyu 👤 Gu, Zhiping 👤 Kumar, Sanjeev 👤 Zaremba, Sam 👤 Larsen, Christopher N. 👤 Jen, Wei 👤 Klem, Edward B. 👤 Scheuermann, Richard H. ⏰ 2012 📚 Viruses

• Computers and viral diseases. Preliminary bioinformatics studies on the design of a synthetic vaccine and a preventative peptidomimetic antagonist against the SARS-CoV-2 (2019-nCoV, COVID-19) coronavirus.

  👤 Robson, B ⏰ 2020 📚 Comput Biol Med

• Structure of the SARS-unique domain C from the bat coronavirus HKU4

  👤 Staup, Andrew J. 👤 De Silva, Ivon U. 👤 Catt, Justin T. 👤 Tan, Xuan 👤 Hammond, Robert G. 👤 Johnson, Margaret A. ⏰ 2019 📚 Natural Product Communications

• Comparative proteome analysis of tracheal tissues in response to infectious bronchitis coronavirus, Newcastle disease virus, and avian influenza virus H9 subtype virus infection

  👤 Sun, Junfeng 👤 Han, Zongxi 👤 Shao, Yuhao 👤 Cao, Zhongzan 👤 Kong, Xiangang 👤 Liu, Shengwang ⏰ 2014 📚 Proteomics

• A chimeric multi-epitope DNA vaccine elicited specific antibody response against severe acute respiratory syndrome-associated coronavirus which attenuated the virulence of SARS-CoV in vitro

  👤 Wang, Xiaohua 👤 Xu, Wei 👤 Tong, Deyan 👤 Ni, Jing 👤 Gao, Haifeng 👤 Wang, Ying 👤 Chu, Yiwei 👤 Li, Pingping 👤 Yang, Xiaoming 👤 Xiong, Sidong ⏰ 2008 📚 Immunology Letters

• Coronavirus genomics and bioinformatics analysis

  👤 Woo, Patrick C.Y. 👤 Huang, Yi 👤 Lau, Susanna K.P. 👤 Yuen, Kwok Yung ⏰ 2010 📚 Viruses

• Two deletion variants of Middle East respiratory syndrome coronavirus found in a patient with characteristic symptoms

  👤 Xie, Qian 👤 Cao, Yujuan 👤 Su, Juan 👤 Wu, Jie 👤 Wu, Xianbo 👤 Wan, Chengsong 👤 He, Mingliang 👤 Ke, Changwen 👤 Zhang, Bao 👤 Zhao, Wei ⏰ 2017 📚 Archives of Virology

• Selection of SARS-Coronavirus-specific B cell epitopes by phage peptide library screening and evaluation of the immunological effect of epitope-based peptides on mice

  👤 Yu, Hua 👤 Jiang, Li Fang 👤 Fang, Dan Yun 👤 Yan, Hui Jun 👤 Zhou, Jing Jiao 👤 Zhou, Jun Mei 👤 Liang, Yu 👤 Gao, Yang 👤 Zhao, Wei 👤 Long, Bei Guo ⏰ 2007 📚 Virology

• Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1.

  👤 Zhang, Chengxin 👤 Zheng, Wei 👤 Huang, Xiaoqiang 👤 Bell, Eric W 👤 Zhou, Xiaogen 👤 Zhang, Yang ⏰ 2020 📚 J Proteome Res

• Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors

  👤 Zhang, Yuan 👤 Zheng, Nan 👤 Nan, Peng 👤 Cao, Ying 👤 Hasegawa, Masami 👤 Zhong, Yang ⏰ 2007 📚 Computational Biology and Chemistry

• Computational characterization and design of SARS coronavirus receptor recognition and antibody neutralization

  👤 Zhang, Yuan 👤 Zheng, Nan 👤 Zhong, Yang ⏰ 2007 📚 Computational Biology and Chemistry

• Identification of N-linked glycosylation sites in the spike protein and their functional impact on the replication and infectivity of coronavirus infectious bronchitis virus in cell culture

  👤 Zheng, Jie 👤 Yamada, Yoshiyuki 👤 Fung, To Sing 👤 Huang, Mei 👤 Chia, Raymond 👤 Liu, Ding Xiang ⏰ 2018 📚 Virology