π Modeling
Articles (63)
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Evaluating the potential impact of targeted vaccination strategies against severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) outbreaks in the healthcare setting
π€ Abdirizak, Fatima π€ Lewis, Rayleen π€ Chowell, Gerardo β° 2019 π Theoretical Biology and Medical Modelling
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Computational modeling of the bat HKU4 coronavirus 3CLpro inhibitors as a tool for the development of antivirals against the emerging Middle East respiratory syndrome (MERS) coronavirus
π€ Abuhammad, Areej π€ Al-Aqtash, Rua'a A. π€ Anson, Brandon J. π€ Mesecar, Andrew D. π€ Taha, Mutasem O. β° 2017 π Journal of Molecular Recognition
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A Case Study Evaluating the Risk of Infection from Middle Eastern Respiratory Syndrome Coronavirus (MERS-CoV) in a Hospital Setting Through Bioaerosols
π€ Adhikari, Umesh π€ Chabrelie, Alexandre π€ Weir, Mark π€ Boehnke, Kevin π€ McKenzie, Erica π€ Ikner, Luisa π€ Wang, Meng π€ Wang, Qing π€ Young, Kyana π€ Haas, Charles N. π€ Rose, Joan π€ Mitchell, Jade β° 2019 π Risk Analysis
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Coronavirus main proteinase (3CLpro) Structure: Basis for design of anti-SARS drugs
π€ Anand, Kanchan π€ Ziebuhr, John π€ Wadhwani, Parvesh π€ Mesters, Jeroen R. π€ Hilgenfeld, Rolf β° 2003 π Science
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A trimerizing GxxxG Motif is uniquely inserted in the severe acute respiratory syndrome (SARS) coronavirus spike protein transmembrane domain
π€ Arbely, Eyal π€ Granot, Zvi π€ Kass, Itamar π€ Orly, Joseph π€ Arkin, Isaiah T. β° 2006 π Biochemistry
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The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity
π€ Barretto, Naina π€ Jukneliene, Dalia π€ Ratia, Kiira π€ Chen, Zhongbin π€ Mesecar, Andrew D. π€ Baker, Susan C. β° 2005 π Journal of Virology
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The 2019-new coronavirus epidemic: Evidence for virus evolution.
π€ Benvenuto, Domenico π€ Giovanetti, Marta π€ Ciccozzi, Alessandra π€ Spoto, Silvia π€ Angeletti, Silvia π€ Ciccozzi, Massimo β° 2020 π J Med Virol
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Potential broad spectrum inhibitors of the Coronavirus 3CLpro: A virtual screening and structure-based drug design study
π€ Berry, Michael π€ Fielding, Burtram C. π€ Gamieldien, Junaid β° 2015 π Viruses
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Effects of air temperature and relative humidity on coronavirus survival on surfaces
π€ Casanova, Lisa M. π€ Jeon, Soyoung π€ Rutala, William A. π€ Weber, David J. π€ Sobsey, Mark D. β° 2010 π Applied and Environmental Microbiology
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Modeling [18F]-FDG lymphoid tissue kinetics to characterize nonhuman primate immune response to Middle East respiratory syndrome-coronavirus aerosol challenge
π€ Chefer, Svetlana π€ Thomasson, David π€ Seidel, Jurgen π€ Reba, Richard C. π€ Bohannon, J. Kyle π€ Lackemeyer, Mathew G. π€ Bartos, Chris π€ Sayre, Philip J. π€ Bollinger, Laura π€ Hensley, Lisa E. π€ Jahrling, Peter B. π€ Johnson, Reed F. β° 2015 π EJNMMI Research
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First two months of the 2019 Coronavirus Disease (COVID-19) epidemic in China: real-time surveillance and evaluation with a second derivative model.
π€ Chen, Xinguang π€ Yu, Bin β° 2020 π Glob Health Res Policy
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Structure analysis of the receptor binding of 2019-nCoV.
π€ Chen, Yun π€ Guo, Yao π€ Pan, Yihang π€ Zhao, Zhizhuang Joe β° 2020 π Biochem Biophys Res Commun
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Fusion core structure of the severe acute respiratory syndrome coronavirus (SARS-CoV): In search of potent SARS-CoV entry inhibitors
π€ Chu, Ling Hon Matthew π€ Chan, Siu Hong π€ Tsai, Sau Na π€ Wang, Yi π€ Cheng, Christopher Hon Ki π€ Wong, Kam Bo π€ Waye, Mary Miu Yee π€ Ngai, Sai Ming β° 2008 π Journal of Cellular Biochemistry
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COVID-19 Outbreak: An Overview.
π€ Ciotti, Marco π€ Angeletti, Silvia π€ Minieri, Marilena π€ Giovannetti, Marta π€ Benvenuto, Domenico π€ Pascarella, Stefano π€ Sagnelli, Caterina π€ Bianchi, Martina π€ Bernardini, Sergio π€ Ciccozzi, Massimo β° 2020 π Chemotherapy
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Crystal structure and functional analysis of the SARS-coronavirus RNA cap 2β²-o-methyltransferase nsp10/nsp16 complex
π€ Decroly, Etienne π€ Debarnot, Claire π€ Ferron, FranΓ§ois π€ Bouvet, Mickael π€ Coutard, Bruno π€ Imbert, Isabelle π€ Gluais, Laure π€ Papageorgiou, Nicolas π€ Sharff, Andrew π€ Bricogne, GΓ©rard π€ Ortiz-Lombardia, Miguel π€ Lescar, Julien π€ Canard, Bruno β° 2011 π PLoS Pathogens
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Anti-HCV, nucleotide inhibitors, repurposing against COVID-19.
π€ Elfiky, Abdo A β° 2020 π Life Sci
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Structural and molecular modeling studies reveal a new mechanism of action of chloroquine and hydroxychloroquine against SARS-CoV-2 infection.
π€ Fantini, Jacques π€ Scala, Coralie Di π€ Chahinian, Henri π€ Yahi, Nouara β° 2020 π Int J Antimicrob Agents
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Structure-based design, synthesis, and biological evaluation of a series of novel and reversible inhibitors for the severe acute respiratory syndrome - Coronavirus papain-like protease
π€ Ghosh, Arun K. π€ Takayama, Jun π€ Aubin, Yoann π€ Ratia, Kiira π€ Chaudhuri, Rima π€ Baez, Yahira π€ Sleeman, Katrina π€ Coughlin, Melissa π€ Nichols, Daniel B. π€ Mulhearn, Debbie C. π€ Prabhakar, Bellur S. π€ Baker, Susan C. π€ Johnson, Michael E. π€ Mesecar, Andrew D. β° 2009 π Journal of Medicinal Chemistry
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Severe acute respiratory syndrome coronavirus papain-like novel protease inhibitors: Design, synthesis, protein-ligand X-ray structure and biological evaluation
π€ Ghosh, Arun K. π€ Takayama, Jun π€ Rao, Kalapala Venkateswara π€ Ratia, Kiira π€ Chaudhuri, Rima π€ Mulhearn, Debbie C. π€ Lee, Hyun π€ Nichols, Daniel B. π€ Baliji, Surendranath π€ Baker, Susan C. π€ Johnson, Michael E. π€ Mesecar, Andrew D. β° 2010 π Journal of Medicinal Chemistry
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Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury
π€ Gralinski, Lisa E. π€ Bankhead III, Armand π€ Jeng, Sophia π€ Menachery, Vineet D. π€ Proll, Sean π€ Belisle, Sarah E. π€ Matzke, Melissa π€ Webb-Robertson, Bobbie Jo M. π€ Luna, Maria L. π€ Shukla, Anil K. π€ Ferris, Martin T. π€ Bolles, Meagan π€ Chang, Jean π€ Aicher, Lauri π€ Waters, Katrina M. π€ Smith, Richard D. π€ Metz, Thomas O. π€ Law, G. Lynn π€ Katze, Michael G. π€ McWeeney, Shannon π€ Baric, Ralph S. β° 2013 π mBio
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Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes
π€ Grossoehme, Nicholas E. π€ Li, Lichun π€ Keane, Sarah C. π€ Liu, Pinghua π€ Dann III, Charles E. π€ Leibowitz, Julian L. π€ Giedroc, David P. β° 2009 π Journal of Molecular Biology
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Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitors
π€ Hoffmann, Marcin π€ Eitner, Krystian π€ Von Grotthuss, Marcin π€ Rychlewski, Leszek π€ Banachowicz, Ewa π€ Grabarkiewicz, Tomasz π€ Szkoda, Tomasz π€ Kolinski, Andrzej β° 2006 π Journal of Computer-Aided Molecular Design
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Immunological, structural, and preliminary X-ray diffraction characterizations of the fusion core of the SARS-coronavirus spike protein
π€ Hsu, Chun Hua π€ Ko, Tzu Ping π€ Yu, Hui Ming π€ Tang, Tswen Kei π€ Chen, Shui Tsung π€ Wang, Andrew H.J. β° 2004 π Biochemical and Biophysical Research Communications
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[Treatment strategies for colorectal cancer patients in tumor hospitals under the background of corona virus disease 2019].
π€ Hu, X H π€ Niu, W B π€ Zhang, J F π€ Li, B K π€ Yu, B π€ Zhang, Z Y π€ Zhou, C X π€ Zhang, X N π€ Gao, Y π€ Wang, G Y β° 2020 π Zhonghua Wei Chang Wai Ke Za Zhi
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[Thinking of treatment strategies for colorectal cancer patients in tumor hospitals under the background of coronavirus pneumonia].
π€ Hu, X H π€ Niu, W B π€ Zhang, J F π€ Li, B K π€ Yu, B π€ Zhang, Z Y π€ Zhou, C X π€ Zhang, X N π€ Gao, Y π€ Wang, G Y β° 2020 π Zhonghua Wei Chang Wai Ke Za Zhi
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Spatial-temporal distribution of COVID-19 in China and its prediction: A data-driven modeling analysis.
π€ Huang, Rui π€ Liu, Miao π€ Ding, Yongmei β° 2020 π J Infect Dev Ctries
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COVID-19 spike-host cell receptor GRP78 binding site prediction.
π€ Ibrahim, Ibrahim M π€ Abdelmalek, Doaa H π€ Elshahat, Mohammed E π€ Elfiky, Abdo A β° 2020 π J Infect
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Viral metagenomics, protein structure, and reverse genetics: Key strategies for investigating coronaviruses
π€ Johnson, Bryan A. π€ Graham, Rachel L. π€ Menachery, Vineet D. β° 2018 π Virology
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Virtual screening and repurposing of FDA approved drugs against COVID-19 main protease.
π€ Kandeel, Mahmoud π€ Al-Nazawi, Mohammed β° 2020 π Life Sci
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Analysis of COVID-19 infection spread in Japan based on stochastic transition model.
π€ Karako, Kenji π€ Song, Peipei π€ Chen, Yu π€ Tang, Wei β° 2020 π Biosci Trends
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Individual and common inhibitors of coronavirus and picornavirus main proteases
π€ Kuo, Chih Jung π€ Liu, Hun Ge π€ Lo, Yueh Kuei π€ Seong, Churl Min π€ Lee, Kee In π€ Jung, Young Sik π€ Liang, Po Huang β° 2009 π FEBS Letters
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Identification of a novel betacoronavirus (merbecovirus) in amur hedgehogs from China
π€ Lau, Susanna K.P. π€ Luk, Hayes K.H. π€ Wong, Antonio C.P. π€ Fan, Rachel Y.Y. π€ Lam, Carol S.F. π€ Li, Kenneth S.M. π€ Ahmed, Syed Shakeel π€ Chow, Franklin W.N. π€ Cai, Jian Piao π€ Zhu, Xun π€ Chan, Jasper F.W. π€ Lau, Terrence C.K. π€ Cao, Kaiyuan π€ Li, Mengfeng π€ Woo, Patrick C.Y. π€ Yuen, Kwok Yung β° 2019 π Viruses
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Modeling the spread of Middle East respiratory syndrome coronavirus in Saudi Arabia
π€ Lin, Qianying π€ Chiu, Alice P.Y. π€ Zhao, Shi π€ He, Daihai β° 2018 π Statistical Methods in Medical Research
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Characterization of HCoV-229E fusion core: Implications for structure basis of coronavirus membrane fusion
π€ Liu, Cheng π€ Feng, Youjun π€ Gao, Feng π€ Zhang, Qiangmin π€ Wang, Ming β° 2006 π Biochemical and Biophysical Research Communications
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Amino acids 1 to 422 of the spike protein of SARS associated coronavirus are required for induction of cyclooxygenase-2
π€ Liu, Mo π€ Gu, Chunfang π€ Wu, Jianguo π€ Zhu, Ying β° 2006 π Virus Genes
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Spike protein recognition of mammalian ACE2 predicts the host range and an optimized ACE2 for SARS-CoV-2 infection.
π€ Luan, Junwen π€ Lu, Yue π€ Jin, Xiaolu π€ Zhang, Leiliang β° 2020 π Biochem Biophys Res Commun
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Molecular mapping of the RNA cap 2β²-O-methyltransferase activation interface between severe acute respiratory syndrome coronavirus nsp10 and nsp16
π€ Lugari, Adrien π€ Betzi, Stephane π€ Decroly, Etienne π€ Bonnaud, Emmanuel π€ Hermant, AurΓ©lie π€ Guillemot, Jean Claude π€ Debarnot, Claire π€ Borg, Jean Paul π€ Bouvet, MickaΓ«l π€ Canard, Bruno π€ Morelli, Xavier π€ LΓ©cine, Patrick β° 2010 π Journal of Biological Chemistry
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Nucleocapsid protein of SARS coronavirus tightly binds to human cyclophilin A
π€ Luo, Cheng π€ Luo, Haibin π€ Zheng, Suxin π€ Gui, Chunshan π€ Yue, Liduo π€ Yu, Changying π€ Sun, Tao π€ He, Peilan π€ Chen, Jing π€ Shen, Jianhua π€ Luo, Xiaomin π€ Li, Yixue π€ Liu, Hong π€ Bai, Donglu π€ Shen, Jingkang π€ Yang, Yiming π€ Li, Fangqiu π€ Zuo, Jianping π€ Hilgenfeld, Rolf π€ Pei, Gang π€ Chen, Kaixian π€ Shen, Xu π€ Jiang, Hualiang β° 2004 π Biochemical and Biophysical Research Communications
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Insilico Alpha-Helical Structural Recognition of Temporin Antimicrobial Peptides and Its Interactions with Middle East Respiratory Syndrome-Coronavirus
π€ Marimuthu, Sathish Kumar π€ Nagarajan, Krishnanand π€ Perumal, Sathish Kumar π€ Palanisamy, Selvamani π€ Subbiah, Latha β° 2019 π International Journal of Peptide Research and Therapeutics
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The effect of inhibition of PP1 and TNFΞ± signaling on pathogenesis of SARS coronavirus
π€ McDermott, Jason E. π€ Mitchell, Hugh D. π€ Gralinski, Lisa E. π€ Eisfeld, Amie J. π€ Josset, Laurence π€ Bankhead, Armand π€ Neumann, Gabriele π€ Tilton, Susan C. π€ SchΓ€fer, Alexandra π€ Li, Chengjun π€ Fan, Shufang π€ McWeeney, Shannon π€ Baric, Ralph S. π€ Katze, Michael G. π€ Waters, Katrina M. β° 2016 π BMC Systems Biology
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Transmission potential of the novel coronavirus (COVID-19) onboard the diamond Princess Cruises Ship, 2020.
π€ Mizumoto, Kenji π€ Chowell, Gerardo β° 2020 π Infect Dis Model
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Characteristics and outcomes of coronavirus infection in children: The role of viral factors and an immunocompromised state
π€ Ogimi, Chikara π€ Englund, Janet A. π€ Bradford, Miranda C. π€ Qin, Xuan π€ Boeckh, Michael π€ Waghmare, Alpana β° 2019 π Journal of the Pediatric Infectious Diseases Society
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Practical Strategies Against the Novel Coronavirus and COVID-19-the Imminent Global Threat.
π€ Rahimi, Farid π€ Talebi Bezmin Abadi, Amin β° 2020 π Arch Med Res
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Computers and viral diseases. Preliminary bioinformatics studies on the design of a synthetic vaccine and a preventative peptidomimetic antagonist against the SARS-CoV-2 (2019-nCoV, COVID-19) coronavirus.
π€ Robson, B β° 2020 π Comput Biol Med
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High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2.
π€ Sanche, Steven π€ Lin, Yen Ting π€ Xu, Chonggang π€ Romero-Severson, Ethan π€ Hengartner, Nick π€ Ke, Ruian β° 2020 π Emerg Infect Dis
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Epigenetic landscape during coronavirus infection
π€ SchΓ€fer, Alexandra π€ Baric, Ralph S. β° 2017 π Pathogens
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Homology-based identification of a mutation in the coronavirus RNA-dependent RNA polymerase that confers resistance to multiple mutagens
π€ Sexton, Nicole R. π€ Smith, Everett Clinton π€ Blanc, HervΓ© π€ Vignuzzi, Marco π€ Peersen, Olve B. π€ Denison, Mark R. β° 2016 π Journal of Virology
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Pathways of cross-species transmission of synthetically reconstructed zoonotic severe acute respiratory syndrome coronavirus
π€ Sheahan, Timothy π€ Rockx, Barry π€ Donaldson, Eric π€ Corti, Davide π€ Baric, Ralph β° 2008 π Journal of Virology
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Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells
π€ Sims, Amy C. π€ Tilton, Susan C. π€ Menachery, Vineet D. π€ Gralinski, Lisa E. π€ SchΓ€fer, Alexandra π€ Matzke, Melissa M. π€ Webb-Robertson, Bobbie Jo M. π€ Chang, Jean π€ Luna, Maria L. π€ Long, Casey E. π€ Shukla, Anil K. π€ Bankhead III, Armand R. π€ Burkett, Susan E. π€ Zornetzer, Gregory π€ Tseng, Chien Te Kent π€ Metz, Thomas O. π€ Pickles, Raymond π€ McWeeney, Shannon π€ Smith, Richard D. π€ Katze, Michael G. π€ Waters, Katrina M. π€ Barica, Ralph S. β° 2013 π Journal of Virology
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Evaluation of homology modeling of the severe acute respiratory syndrome (SARS) coronavirus main protease for structure based drug design
π€ Takeda-Shitaka, Mayuko π€ Nojima, Hiroyuki π€ Takaya, Daisuke π€ Kanou, Kazuhiko π€ Iwadate, Mitsuo π€ Umeyama, Hideaki β° 2004 π Chemical and Pharmaceutical Bulletin
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Estimation of the Transmission Risk of the 2019-nCoV and Its Implication for Public Health Interventions.
π€ Tang, Biao π€ Wang, Xia π€ Li, Qian π€ Bragazzi, Nicola Luigi π€ Tang, Sanyi π€ Xiao, Yanni π€ Wu, Jianhong β° 2020 π J Clin Med
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When will the battle against novel coronavirus end in Wuhan: A SEIR modeling analysis.
π€ Wan, Kangkang π€ Chen, Jing π€ Lu, Changming π€ Dong, Lanlan π€ Wu, Zhicheng π€ Zhang, Lianglu β° 2020 π J Glob Health
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Locally Informed Simulation to Predict Hospital Capacity Needs During the COVID-19 Pandemic.
π€ Weissman, Gary E π€ Crane-Droesch, Andrew π€ Chivers, Corey π€ Luong, ThaiBinh π€ Hanish, Asaf π€ Levy, Michael Z π€ Lubken, Jason π€ Becker, Michael π€ Draugelis, Michael E π€ Anesi, George L π€ Brennan, Patrick J π€ Christie, Jason D π€ Hanson Iii, C William π€ Mikkelsen, Mark E π€ Halpern, Scott D β° 2020 π Ann Intern Med
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A case for the ancient origin of coronaviruses
π€ Wertheim, Joel O. π€ Chu, Daniel K.W. π€ Peiris, Joseph S.M. π€ Pond, Sergei L.Kosakovsky π€ Poon, Leo L.M. β° 2013 π Journal of Virology
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Social Capital and Sleep Quality in Individuals Who Self-Isolated for 14 Days During the Coronavirus Disease 2019 (COVID-19) Outbreak in January 2020 in China.
π€ Xiao, Han π€ Zhang, Yan π€ Kong, Desheng π€ Li, Shiyue π€ Yang, Ningxi β° 2020 π Med Sci Monit
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The Effects of Social Support on Sleep Quality of Medical Staff Treating Patients with Coronavirus Disease 2019 (COVID-19) in January and February 2020 in China.
π€ Xiao, Han π€ Zhang, Yan π€ Kong, Desheng π€ Li, Shiyue π€ Yang, Ningxi β° 2020 π Med Sci Monit
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Modeling the early events of severe acute respiratory syndrome coronavirus infection in vitro
π€ Yen, Yu Ting π€ Liao, Fang π€ Hsiao, Cheng Hsiang π€ Kao, Chuan Liang π€ Chen, Yee Chun π€ Wu-Hsieh, Betty A. β° 2006 π Journal of Virology
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Folding of the SARS coronavirus spike glycoprotein immunological fragment (SARS_S1B): Thermodynamic and kinetic investigation correlating with three-dimensional structural modeling
π€ Yu, Changying π€ Gui, Chunshan π€ Luo, Haibin π€ Chen, Lili π€ Zhang, Liang π€ Yu, Hao π€ Yang, Sheng π€ Jiang, Weihong π€ Shen, Jianhua π€ Shen, Xu π€ Jiang, Hualiang β° 2005 π Biochemistry
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A highly conserved cryptic epitope in the receptor-binding domains of SARS-CoV-2 and SARS-CoV.
π€ Yuan, Meng π€ Wu, Nicholas C π€ Zhu, Xueyong π€ Lee, Chang-Chun D π€ So, Ray T Y π€ Lv, Huibin π€ Mok, Chris K P π€ Wilson, Ian A β° 2020 π Science
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Structure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution
π€ Zeng, Qinghong π€ Langereis, Martijn A. π€ Van Vliet, Arno L.W. π€ Huizinga, Eric G. π€ De Groot, Raoul J. β° 2008 π Proceedings of the National Academy of Sciences of the United States of America
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Putative structure and function of ORF3 in SARS coronavirus
π€ Zhang, Xue Wu π€ Yap, Yee Leng β° 2005 π Journal of Molecular Structure: THEOCHEM
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Contribution of porcine aminopeptidase N to porcine deltacoronavirus infection
π€ Zhu, Xinyu π€ Liu, Shudan π€ Wang, Xunlei π€ Luo, Zhaochen π€ Shi, Yuejun π€ Wang, Dang π€ Peng, Guiqing π€ Chen, Huanchun π€ Fang, Liurong π€ Xiao, Shaobo β° 2018 π Emerging Microbes and Infections
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Porcine deltacoronavirus nsp5 antagonizes type I interferon signaling by cleaving STAT2
π€ Zhu, Xinyu π€ Wang, Dang π€ Zhou, Junwei π€ Pan, Ting π€ Chen, Jiyao π€ Yang, Yuting π€ Lv, Mengting π€ Ye, Xu π€ Peng, Guiqing π€ Fang, Liurong π€ Xiao, Shaobo β° 2017 π Journal of Virology